%global __brp_check_rpaths %{nil}
%global packname  splmm
%global packver   1.1.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.3
Release:          1%{?dist}%{?buildtag}
Summary:          Simultaneous Penalized Linear Mixed Effects Models

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-Rcpp >= 1.0.1
BuildRequires:    R-CRAN-emulator 
BuildRequires:    R-CRAN-miscTools 
BuildRequires:    R-CRAN-penalized 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-plot3D 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-Rcpp >= 1.0.1
Requires:         R-CRAN-emulator 
Requires:         R-CRAN-miscTools 
Requires:         R-CRAN-penalized 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-plot3D 
Requires:         R-CRAN-MASS 

%description
Contains functions that fit linear mixed-effects models for
high-dimensional data (p>>n) with penalty for both the fixed effects and
random effects for variable selection. The details of the algorithm can be
found in Luoying Yang PhD thesis (Yang and Wu 2020). The algorithm
implementation is based on the R package 'lmmlasso'. Reference: Yang L, Wu
TT (2020). Model-Based Clustering of Longitudinal Data in
High-Dimensionality. Unpublished thesis.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}