%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  pliman
%global packver   2.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Tools for Plant Image Analysis

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-stars 
BuildRequires:    R-CRAN-terra 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-stars 
Requires:         R-CRAN-terra 

%description
Tools for single or batch image manipulation and analysis as described by
Olivoto (2022) <doi:10.1111/2041-210X.13803> that can be used to quantify
plant leaf area, assess disease severity, count objects, obtain shape
measures, object landmarks, and compute Elliptical Fourier Analysis of the
object outline, as described by Claude (2008)
<doi:10.1007/978-0-387-77789-4>. Additionally, the package includes tools
for analyzing grids, which enables high throughput field phenotyping using
RGB imagery captured by unmanned aerial vehicles.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}