%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  nlmm
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Generalized Laplace Mixed-Effects Models

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0.0
Requires:         R-core >= 3.0.0
BuildRequires:    R-CRAN-Rcpp >= 0.12.13
BuildRequires:    R-CRAN-nlme 
BuildRequires:    R-CRAN-gsl 
BuildRequires:    R-CRAN-lqmm 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-numDeriv 
BuildRequires:    R-CRAN-statmod 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-Qtools 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-CRAN-BH 
Requires:         R-CRAN-Rcpp >= 0.12.13
Requires:         R-CRAN-nlme 
Requires:         R-CRAN-gsl 
Requires:         R-CRAN-lqmm 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-numDeriv 
Requires:         R-CRAN-statmod 
Requires:         R-stats 
Requires:         R-CRAN-Qtools 
Requires:         R-utils 

%description
Provides functions to fit linear mixed models based on convolutions of the
generalized Laplace (GL) distribution. The GL mixed-effects model includes
four special cases with normal random effects and normal errors (NN),
normal random effects and Laplace errors (NL), Laplace random effects and
normal errors (LN), and Laplace random effects and Laplace errors (LL).
The methods are described in Geraci and Farcomeni (2020, Statistical
Methods in Medical Research) <doi:10.1177/0962280220903763>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}