%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  HCmodelSets
%global packver   1.1.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.3
Release:          1%{?dist}%{?buildtag}
Summary:          Regression with a Large Number of Potential Explanatory Variables

License:          GPL-2 | GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-survival 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-survival 

%description
Software for performing the reduction, exploratory and model selection
phases of the procedure proposed by Cox, D.R. and Battey, H.S. (2017)
<doi:10.1073/pnas.1703764114> for sparse regression when the number of
potential explanatory variables far exceeds the sample size. The software
supports linear regression, likelihood-based fitting of generalized linear
regression models and the proportional hazards model fitted by partial
likelihood.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}