translate_codon {coil} | R Documentation |
Censored Translation of a codon.
Description
Translate a codon of DNA sequence using the censored translation table. this translates codons for which the amino acids is unambiguous across mitochondrial genetic codes across the animal kingdom and does not translate those for which the amino acid varies, but rather outputs a ? in the string.
Usage
translate_codon(codon)
Arguments
codon |
a three letter DNA string. |
Details
Censored translation table: FFLLSSSSYY?*CCWWLLLLPPPPHHQQRRRRII?MTTTTNN?KSS??VVVVAAAADDEEGGGG Base1 = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG Base2 = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG Base3 = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
[Package coil version 1.2.4 Index]