%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  EstimationTools
%global packver   4.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          4.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Maximum Likelihood Estimation for Probability Functions from Data Sets

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-DEoptim 
BuildRequires:    R-CRAN-BBmisc 
BuildRequires:    R-CRAN-GA 
BuildRequires:    R-CRAN-gaussquad 
BuildRequires:    R-CRAN-Rdpack 
BuildRequires:    R-utils 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-numDeriv 
BuildRequires:    R-CRAN-boot 
BuildRequires:    R-CRAN-autoimage 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-stringr 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-DEoptim 
Requires:         R-CRAN-BBmisc 
Requires:         R-CRAN-GA 
Requires:         R-CRAN-gaussquad 
Requires:         R-CRAN-Rdpack 
Requires:         R-utils 
Requires:         R-stats 
Requires:         R-CRAN-numDeriv 
Requires:         R-CRAN-boot 
Requires:         R-CRAN-autoimage 
Requires:         R-graphics 
Requires:         R-CRAN-stringr 

%description
Total Time on Test plot and routines for parameter estimation of any
lifetime distribution implemented in R via maximum likelihood (ML) given a
data set. It is implemented thinking on parametric survival analysis, but
it feasible to use in parameter estimation of probability density or mass
functions in any field. The main routines 'maxlogL' and 'maxlogLreg' are
wrapper functions specifically developed for ML estimation. There are
included optimization procedures such as 'nlminb' and 'optim' from base
package, and 'DEoptim' Mullen (2011) <doi: 10.18637/jss.v040.i06>.
Standard errors are estimated with 'numDeriv' Gilbert (2011)
<https://CRAN.R-project.org/package=numDeriv> or the option 'Hessian =
TRUE' of 'optim' function.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}