%global __brp_check_rpaths %{nil}
%global packname  PAC
%global packver   1.1.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.4
Release:          1%{?dist}%{?buildtag}
Summary:          Partition-Assisted Clustering and Multiple Alignments of Networks

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildRequires:    R-CRAN-Rcpp >= 0.12.2
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-parmigene 
BuildRequires:    R-CRAN-infotheo 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-Rtsne 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggrepel 
Requires:         R-CRAN-Rcpp >= 0.12.2
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-parmigene 
Requires:         R-CRAN-infotheo 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-Rtsne 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggrepel 

%description
Implements partition-assisted clustering and multiple alignments of
networks. It 1) utilizes partition-assisted clustering to find robust and
accurate clusters and 2) discovers coherent relationships of clusters
across multiple samples. It is particularly useful for analyzing
single-cell data set. Please see Li et al. (2017)
<doi:10.1371/journal.pcbi.1005875> for detail method description.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}