%global __brp_check_rpaths %{nil}
%global packname  HaDeX
%global packver   1.2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.2
Release:          1%{?dist}%{?buildtag}
Summary:          Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.0
Requires:         R-core >= 3.0
BuildArch:        noarch
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-gsubfn 
BuildRequires:    R-CRAN-latex2exp 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-gsubfn 
Requires:         R-CRAN-latex2exp 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tidyr 

%description
Functions for processing, analysis and visualization of Hydrogen Deuterium
eXchange monitored by Mass Spectrometry experiments (HDX-MS)
(10.1093/bioinformatics/btaa587). 'HaDeX' introduces a new standardized
and reproducible workflow for the analysis of the HDX-MS data, including
novel uncertainty intervals. Additionally, it covers data exploration,
quality control and generation of publication-quality figures. All
functionalities are also available in the in-built 'Shiny' app.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}