plotSqMarks {idiogramFISH} | R Documentation |
sqPlotMarkCP This is an internal function that plot marks
Description
It returns a plot
Usage
plotSqMarks(
chromatidsCheck_1,
chromatidsCheck_2,
circularPlot,
squareness,
xMarkSq,
yMarkSq,
dfMarkColorInt,
lwd.marks2,
listMarkPosSq,
listChrSize,
specialChrWidth,
chrWidth,
yfactor,
markN,
ptsl,
bannedMarkName3,
y,
markLabelSize,
pattern,
separFactor,
labelSpacing,
circleCenter,
circleCenterY,
radius,
legend,
ylistTransChrSimple,
rotation,
labelOutwards,
x,
xModifierMH,
pts,
alpha_val = 1
)
Arguments
circularPlot |
boolean TRUE for circ. |
squareness |
squareness of vertices < |
dfMarkColorInt |
colors for marks |
listMarkPosSq |
list of df. of mark pos. |
listChrSize |
chr size df list |
specialChrWidth |
numeric, width of chr. |
chrWidth |
numeric, width of chr. |
yfactor |
yMark distortion based on canvas proportion |
y |
list, y coords. |
markLabelSize |
numeric, font size |
pattern |
character, regex |
separFactor |
numeric, sep. kars. |
labelSpacing |
numeric, spacing |
circleCenter |
numeric |
circleCenterY |
numeric |
radius |
numeric |
legend |
character |
rotation |
rotate |
labelOutwards |
srt |
Value
plot
[Package idiogramFISH version 2.0.13 Index]