%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  idiogramFISH
%global packver   2.0.13
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.13
Release:          1%{?dist}%{?buildtag}
Summary:          Shiny App. Idiograms with Marks and Karyotype Indices

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


Requires:         pandoc
BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-crayon 
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-scales 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-crayon 
Requires:         R-CRAN-plyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-scales 

%description
Plot idiograms of karyotypes, plasmids, circular chr. having a set of
data.frames for chromosome data and optionally mark data. Two styles of
chromosomes can be used: without or with visible chromatids. Supports
micrometers, cM and Mb or any unit. Three styles of centromeres are
available: triangle, rounded and inProtein; and six styles of marks are
available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow
(downArrow), exProtein (inProtein); its legend (label) can be drawn inline
or to the right of karyotypes. Idiograms can also be plotted in concentric
circles. It is possible to calculate chromosome indices by Levan et al.
(1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of
Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986)
<doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986)
and Levan et al. (1964).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}