%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  morse
%global packver   3.3.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          3.3.2
Release:          1%{?dist}%{?buildtag}
Summary:          Modelling Reproduction and Survival Data in Ecotoxicology

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-rjags >= 4.0
BuildRequires:    R-CRAN-ggplot2 >= 2.1.0
BuildRequires:    R-CRAN-coda 
BuildRequires:    R-CRAN-deSolve 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-epitools 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-zoo 
Requires:         R-CRAN-rjags >= 4.0
Requires:         R-CRAN-ggplot2 >= 2.1.0
Requires:         R-CRAN-coda 
Requires:         R-CRAN-deSolve 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-epitools 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-magrittr 
Requires:         R-methods 
Requires:         R-CRAN-reshape2 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-zoo 

%description
Advanced methods for a valuable quantitative environmental risk assessment
using Bayesian inference of survival and reproduction Data. Among others,
it facilitates Bayesian inference of the general unified threshold model
of survival (GUTS). See our companion paper Baudrot and Charles (2021)
<doi:10.21105/joss.03200>, as well as complementary details in Baudrot et
al. (2018) <doi:10.1021/acs.est.7b05464> and Delignette-Muller et al.
(2017) <doi:10.1021/acs.est.6b05326>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}