%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  adaptIVPT
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Adaptive Bioequivalence Design for In-Vitro Permeation Tests

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4
Requires:         R-core >= 3.4
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-rgl 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-CRAN-RcppProgress 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-rgl 

%description
Contains functions carrying out adaptive procedures using mixed scaling
approach to establish bioequivalence for in-vitro permeation test (IVPT)
data. Currently, the package provides procedures based on parallel
replicate design and balanced data, according to the U.S. Food and Drug
Administration's "Draft Guidance on Acyclovir"
<https://www.accessdata.fda.gov/drugsatfda_docs/psg/Acyclovir_topical%%20cream_RLD%%2021478_RV12-16.pdf>.
Potvin et al. (2008) <doi:10.1002/pst.294> provides the basis for our
adaptive design (see Method B). For a comprehensive overview of the
method, refer to Lim et al. (2023) <doi:10.1002/pst.2333>. This package
reflects the views of the authors and should not be construed to represent
the views or policies of the U.S. Food and Drug Administration.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}