%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  telemetR
%global packver   1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Filter and Analyze Generalised Telemetry Data from Organisms

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1
Requires:         R-core >= 4.1
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-zoo 
BuildRequires:    R-CRAN-ggplot2 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-zoo 
Requires:         R-CRAN-ggplot2 

%description
Analyze telemetry datasets generalized to allow any technology. The
filtering steps check for false positives caused by reflected
transmissions from surfaces and false pings from other noise generating
equipment. The filters are based on JSATS filtering algorithms found in
package 'filteRjsats' <https://CRAN.R-project.org/package=filteRjsats> but
have been generalized to allow the user to define many of the filtering
variables. Additionally, this package contains scripts used to help
identify an optimal maximum blanking period as defined in Capello et al
(2015) <doi:10.1371/journal.pone.0134002>. The functions were written
according to their manuscript description, but have not been reviewed by
the authors for accuracy. It is included here as is, without warranty.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}