%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  aPEAR
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Advanced Pathway Enrichment Analysis Representation

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-arules 
BuildRequires:    R-CRAN-bayesbio 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-lsa 
BuildRequires:    R-CRAN-MCL 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-utils 
BuildRequires:    R-stats 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-ggforce 
Requires:         R-CRAN-arules 
Requires:         R-CRAN-bayesbio 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-lsa 
Requires:         R-CRAN-MCL 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-tibble 
Requires:         R-utils 
Requires:         R-stats 
Requires:         R-methods 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-ggforce 

%description
Simplify pathway enrichment analysis results by detecting clusters of
similar pathways and visualizing it as an enrichment network, where nodes
and edges describe the pathways and similarity between them, respectively.
This reduces the redundancy of the overlapping pathways and helps to
notice the most important biological themes in the data (Kerseviciute and
Gordevicius (2023) <doi:10.1101/2023.03.28.534514>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}