%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  aeddo
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          Automated and Early Detection of Disease Outbreaks

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-lifecycle 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-utils 
Requires:         R-CRAN-rlang 

%description
A powerful tool for automating the early detection of disease outbreaks in
time series data. 'aeddo' employs advanced statistical methods, including
hierarchical models, in an innovative manner to effectively characterize
outbreak signals. It is particularly useful for epidemiologists, public
health professionals, and researchers seeking to identify and respond to
disease outbreaks in a timely fashion. For a detailed reference on
hierarchical models, consult Henrik Madsen and Poul Thyregod's book
(2011), ISBN: 9781420091557.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}