%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  Arothron
%global packver   2.0.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.5
Release:          1%{?dist}%{?buildtag}
Summary:          Geometric Morphometric Methods and Virtual Anthropology Tools

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-stats4 >= 4.0
BuildRequires:    R-methods >= 3.5
BuildRequires:    R-graphics >= 3.4.0
BuildRequires:    R-grDevices >= 3.4.0
BuildRequires:    R-stats >= 3.4.0
BuildRequires:    R-utils >= 3.4.0
BuildRequires:    R-CRAN-Morpho >= 2.5
BuildRequires:    R-CRAN-vegan >= 2.4
BuildRequires:    R-CRAN-compositions >= 1.40.1
BuildRequires:    R-CRAN-foreach >= 1.4.4
BuildRequires:    R-CRAN-abind >= 1.4
BuildRequires:    R-CRAN-stringr >= 1.3.0
BuildRequires:    R-CRAN-alphashape3d >= 1.3
BuildRequires:    R-CRAN-doParallel >= 1.0.11
BuildRequires:    R-CRAN-rgl >= 1.0.1
BuildRequires:    R-parallel >= 1.0
BuildRequires:    R-CRAN-geometry >= 0.3.6
BuildRequires:    R-CRAN-Rvcg >= 0.17
Requires:         R-stats4 >= 4.0
Requires:         R-methods >= 3.5
Requires:         R-graphics >= 3.4.0
Requires:         R-grDevices >= 3.4.0
Requires:         R-stats >= 3.4.0
Requires:         R-utils >= 3.4.0
Requires:         R-CRAN-Morpho >= 2.5
Requires:         R-CRAN-vegan >= 2.4
Requires:         R-CRAN-compositions >= 1.40.1
Requires:         R-CRAN-foreach >= 1.4.4
Requires:         R-CRAN-abind >= 1.4
Requires:         R-CRAN-stringr >= 1.3.0
Requires:         R-CRAN-alphashape3d >= 1.3
Requires:         R-CRAN-doParallel >= 1.0.11
Requires:         R-CRAN-rgl >= 1.0.1
Requires:         R-parallel >= 1.0
Requires:         R-CRAN-geometry >= 0.3.6
Requires:         R-CRAN-Rvcg >= 0.17

%description
Tools for geometric morphometric analysis. The package includes tools of
virtual anthropology to align two not articulated parts belonging to the
same specimen, to build virtual cavities as endocast (Profico et al, 2021
<doi:10.1002/ajpa.24340>).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}