%global __brp_check_rpaths %{nil}
%global packname  neutralitytestr
%global packver   0.0.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.0.3
Release:          1%{?dist}%{?buildtag}
Summary:          Test for a Neutral Evolutionary Model in Cancer Sequencing Data

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4
Requires:         R-core >= 3.4
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-CRAN-pracma 
BuildRequires:    R-CRAN-ggpmisc 
BuildRequires:    R-CRAN-cowplot 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-scales 
Requires:         R-CRAN-pracma 
Requires:         R-CRAN-ggpmisc 
Requires:         R-CRAN-cowplot 

%description
Package takes frequencies of mutations as reported by high throughput
sequencing data from cancer and fits a theoretical neutral model of tumour
evolution. Package outputs summary statistics and contains code for
plotting the data and model fits. See Williams et al 2016
<doi:10.1038/ng.3489> and Williams et al 2017 <doi:10.1101/096305> for
further details of the method.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}