%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  patternize
%global packver   0.0.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.0.5
Release:          1%{?dist}%{?buildtag}
Summary:          Quantification of Color Pattern Variation

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-raster 
BuildRequires:    R-CRAN-sp 
BuildRequires:    R-CRAN-sf 
BuildRequires:    R-CRAN-abind 
BuildRequires:    R-CRAN-Morpho 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-imager 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-vegan 
BuildRequires:    R-CRAN-RNiftyReg 
BuildRequires:    R-CRAN-geomorph 
BuildRequires:    R-CRAN-ClusterR 
Requires:         R-CRAN-raster 
Requires:         R-CRAN-sp 
Requires:         R-CRAN-sf 
Requires:         R-CRAN-abind 
Requires:         R-CRAN-Morpho 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-imager 
Requires:         R-CRAN-magrittr 
Requires:         R-methods 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-vegan 
Requires:         R-CRAN-RNiftyReg 
Requires:         R-CRAN-geomorph 
Requires:         R-CRAN-ClusterR 

%description
Quantification of variation in organismal color patterns as obtained from
image data. Patternize defines homology between pattern positions across
images either through fixed landmarks or image registration. Pattern
identification is performed by categorizing the distribution of colors
using RGB thresholds or image segmentation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}