%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  memapp
%global packver   2.16
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.16
Release:          1%{?dist}%{?buildtag}
Summary:          The Moving Epidemic Method Web Application

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.4.0
Requires:         R-core >= 3.4.0
BuildArch:        noarch
BuildRequires:    R-CRAN-mem >= 2.18
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-shinydashboard 
BuildRequires:    R-CRAN-shinyWidgets 
BuildRequires:    R-CRAN-shinyBS 
BuildRequires:    R-CRAN-shinyjs 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-stringi 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-formattable 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-plotly 
Requires:         R-CRAN-mem >= 2.18
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-shinydashboard 
Requires:         R-CRAN-shinyWidgets 
Requires:         R-CRAN-shinyBS 
Requires:         R-CRAN-shinyjs 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-stringi 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-formattable 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-plotly 

%description
The Moving Epidemic Method, created by T Vega and JE Lozano (2012, 2015)
<doi:10.1111/j.1750-2659.2012.00422.x>, <doi:10.1111/irv.12330>, allows
the weekly assessment of the epidemic and intensity status to help in
routine respiratory infections surveillance in health systems. Allows the
comparison of different epidemic indicators, timing and shape with past
epidemics and across different regions or countries with different
surveillance systems. Also, it gives a measure of the performance of the
method in terms of sensitivity and specificity of the alert week. 'memapp'
is a web application created in the Shiny framework for the 'mem' R
package.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}