%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  prWarp
%global packver   1.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Warping Landmark Configurations

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildArch:        noarch
BuildRequires:    R-CRAN-Morpho 
Requires:         R-CRAN-Morpho 

%description
Compute bending energies, principal warps, partial warp scores, and the
non-affine component of shape variation for 2D landmark configurations, as
well as Mardia-Dryden distributions and self-similar distributions of
landmarks, as described in Mitteroecker et al. (2020)
<doi:10.1093/sysbio/syaa007>. Working examples to decompose shape
variation into small-scale and large-scale components, and to decompose
the total shape variation into outline and residual shape components are
provided. Two landmark datasets are provided, that quantify skull
morphology in humans and papionin primates, respectively from Mitteroecker
et al. (2020) <doi:10.5061/dryad.j6q573n8s> and Grunstra et al. (2020)
<doi:10.5061/dryad.zkh189373>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}