%global __brp_check_rpaths %{nil}
%global packname  kesernetwork
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Visualization of the KESER Network

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-config >= 0.3.1
BuildRequires:    R-CRAN-golem >= 0.3.1
BuildRequires:    R-CRAN-shinyBS 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-htmltools 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-reactable 
BuildRequires:    R-CRAN-rintrojs 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-shinycssloaders 
BuildRequires:    R-CRAN-shinydashboard 
BuildRequires:    R-CRAN-shinydashboardPlus 
BuildRequires:    R-CRAN-shinyhelper 
BuildRequires:    R-CRAN-shinyWidgets 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-visNetwork 
BuildRequires:    R-CRAN-yaml 
Requires:         R-CRAN-config >= 0.3.1
Requires:         R-CRAN-golem >= 0.3.1
Requires:         R-CRAN-shinyBS 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-htmltools 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-reactable 
Requires:         R-CRAN-rintrojs 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-shinycssloaders 
Requires:         R-CRAN-shinydashboard 
Requires:         R-CRAN-shinydashboardPlus 
Requires:         R-CRAN-shinyhelper 
Requires:         R-CRAN-shinyWidgets 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-visNetwork 
Requires:         R-CRAN-yaml 

%description
A shiny app to visualize the knowledge networks for the code concepts.
Using co-occurrence matrices of EHR codes from Veterans Affairs (VA) and
Massachusetts General Brigham (MGB), the knowledge extraction via sparse
embedding regression (KESER) algorithm was used to construct knowledge
networks for the code concepts. Background and details about the method
can be found at Chuan et al. (2021) <doi:10.1038/s41746-021-00519-z>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}