%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  HodgesTools
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Common Use Tools for Genomic Analysis

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6
Requires:         R-core >= 3.6
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-ini 
BuildRequires:    R-CRAN-qqman 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-RecordLinkage 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-ini 
Requires:         R-CRAN-qqman 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-RecordLinkage 

%description
Built by Hodges lab members for current and future Hodges lab members.
Other individuals are welcome to use as well. Provides useful functions
that the lab uses everyday to analyze various genomic datasets.
Critically, only general use functions are provided; functions specific to
a given technique are reserved for a separate package. As the lab grows,
we expect to continue adding functions to the package to build on previous
lab members code.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}