%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  LCMSQA
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Liquid Chromatography/Mass Spectrometry (LC/MS) Quality Assessment

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-bsplus 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-shinycssloaders 
BuildRequires:    R-CRAN-shinyjs 
BuildRequires:    R-CRAN-shinyWidgets 
Requires:         R-CRAN-bsplus 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-ggplot2 
Requires:         R-methods 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-shinycssloaders 
Requires:         R-CRAN-shinyjs 
Requires:         R-CRAN-shinyWidgets 

%description
The goal of 'LCMSQA' is to make it easy to check the quality of liquid
chromatograph/mass spectrometry (LC/MS) experiments using a 'shiny'
application. This package provides interactive data visualizations for
quality control (QC) samples, including total ion current chromatogram
(TIC), base peak chromatogram (BPC), mass spectrum, extracted ion
chromatogram (XIC), and feature detection results from internal standards
or known metabolites.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}