%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  Greg
%global packver   2.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Regression Helper Functions

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-htmlTable >= 2.0.0
BuildRequires:    R-CRAN-Gmisc >= 1.0.3
BuildRequires:    R-CRAN-forestplot 
BuildRequires:    R-CRAN-broom 
BuildRequires:    R-CRAN-Epi 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-graphics 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-Hmisc 
BuildRequires:    R-CRAN-knitr 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-nlme 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-rms 
BuildRequires:    R-CRAN-sandwich 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-tidyselect 
BuildRequires:    R-utils 
Requires:         R-CRAN-htmlTable >= 2.0.0
Requires:         R-CRAN-Gmisc >= 1.0.3
Requires:         R-CRAN-forestplot 
Requires:         R-CRAN-broom 
Requires:         R-CRAN-Epi 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-glue 
Requires:         R-graphics 
Requires:         R-grDevices 
Requires:         R-CRAN-Hmisc 
Requires:         R-CRAN-knitr 
Requires:         R-methods 
Requires:         R-CRAN-nlme 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-rms 
Requires:         R-CRAN-sandwich 
Requires:         R-stats 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-tidyselect 
Requires:         R-utils 

%description
Methods for manipulating regression models and for describing these in a
style adapted for medical journals. Contains functions for generating an
HTML table with crude and adjusted estimates, plotting hazard ratio,
plotting model estimates and confidence intervals using forest plots,
extending this to comparing multiple models in a single forest plots. In
addition to the descriptive methods, there are functions for the robust
covariance matrix provided by the 'sandwich' package, a function for
adding non-linearities to a model, and a wrapper around the 'Epi'
package's Lexis() functions for time-splitting a dataset when modeling
non-proportional hazards in Cox regressions.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}