%global __brp_check_rpaths %{nil} %global packname SAMGEP %global packver 0.1.0-1 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 0.1.0.1 Release: 1%{?dist}%{?buildtag} Summary: A Semi-Supervised Method for Prediction of Phenotype Event Times License: GPL-3 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildRequires: R-stats BuildRequires: R-CRAN-mvtnorm BuildRequires: R-CRAN-nlme BuildRequires: R-CRAN-pROC BuildRequires: R-CRAN-abind BuildRequires: R-CRAN-nloptr BuildRequires: R-CRAN-foreach BuildRequires: R-CRAN-doParallel BuildRequires: R-parallel BuildRequires: R-CRAN-Rcpp BuildRequires: R-CRAN-RcppArmadillo Requires: R-stats Requires: R-CRAN-mvtnorm Requires: R-CRAN-nlme Requires: R-CRAN-pROC Requires: R-CRAN-abind Requires: R-CRAN-nloptr Requires: R-CRAN-foreach Requires: R-CRAN-doParallel Requires: R-parallel Requires: R-CRAN-Rcpp %description A novel semi-supervised machine learning algorithm to predict phenotype event times using Electronic Health Record (EHR) data. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}