%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  admiralonco
%global packver   1.0.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.0
Release:          1%{?dist}%{?buildtag}
Summary:          Oncology Extension Package for ADaM in 'R' Asset Library

License:          Apache License (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildArch:        noarch
BuildRequires:    R-CRAN-lubridate >= 1.7.4
BuildRequires:    R-CRAN-magrittr >= 1.5
BuildRequires:    R-CRAN-admiral >= 1.0.0
BuildRequires:    R-CRAN-admiraldev >= 1.0.0
BuildRequires:    R-CRAN-tidyselect >= 1.0.0
BuildRequires:    R-CRAN-dplyr >= 0.8.4
BuildRequires:    R-CRAN-rlang >= 0.4.4
BuildRequires:    R-CRAN-lifecycle >= 0.1.0
Requires:         R-CRAN-lubridate >= 1.7.4
Requires:         R-CRAN-magrittr >= 1.5
Requires:         R-CRAN-admiral >= 1.0.0
Requires:         R-CRAN-admiraldev >= 1.0.0
Requires:         R-CRAN-tidyselect >= 1.0.0
Requires:         R-CRAN-dplyr >= 0.8.4
Requires:         R-CRAN-rlang >= 0.4.4
Requires:         R-CRAN-lifecycle >= 0.1.0

%description
Programming oncology specific Clinical Data Interchange Standards
Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in 'R'.
ADaM datasets are a mandatory part of any New Drug or Biologics License
Application submitted to the United States Food and Drug Administration
(FDA). Analysis derivations are implemented in accordance with the
"Analysis Data Model Implementation Guide" (CDISC Analysis Data Model Team
(2021), <https://www.cdisc.org/standards/foundational/adam>). The package
is an extension package of the 'admiral' package.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}