%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  Achilles
%global packver   1.7.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.7.2
Release:          1%{?dist}%{?buildtag}
Summary:          Achilles Data Source Characterization

License:          Apache License
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-DatabaseConnector >= 2.0.0
BuildRequires:    R-CRAN-SqlRender >= 1.6.0
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-ParallelLogger 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-tseries 
BuildRequires:    R-CRAN-rlang 
Requires:         R-CRAN-DatabaseConnector >= 2.0.0
Requires:         R-CRAN-SqlRender >= 1.6.0
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-ParallelLogger 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-tseries 
Requires:         R-CRAN-rlang 

%description
Automated Characterization of Health Information at Large-Scale
Longitudinal Evidence Systems. Creates a descriptive statistics summary
for an Observational Medical Outcomes Partnership Common Data Model
standardized data source. This package includes functions for executing
summary queries on the specified data source and exporting reporting
content for use across a variety of Observational Health Data Sciences and
Informatics community applications.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}