plotClusterProportions {rliger} | R Documentation |
Plot cluster proportions by dataset
Description
Generates plot of clusters sized by the proportion of total cells
Usage
plotClusterProportions(object, return.plot = FALSE)
Arguments
object |
|
return.plot |
Return ggplot object (default FALSE) |
Value
print plot to console (return.plot = FALSE); ggplot object (return.plot = TRUE) list of ggplot objects.
Examples
ligerex <- createLiger(list(ctrl = ctrl, stim = stim))
ligerex <- normalize(ligerex)
ligerex <- selectGenes(ligerex)
ligerex <- scaleNotCenter(ligerex)
ligerex <- optimizeALS(ligerex, k = 5, max.iter = 2)
ligerex <- quantile_norm(ligerex)
ligerex <- louvainCluster(ligerex)
plotClusterProportions(ligerex)
[Package rliger version 1.0.1 Index]