%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  asht
%global packver   1.0.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.1
Release:          1%{?dist}%{?buildtag}
Summary:          Applied Statistical Hypothesis Tests

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-exact2x2 >= 1.6.4
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-exactci 
BuildRequires:    R-CRAN-bpcp 
BuildRequires:    R-CRAN-coin 
BuildRequires:    R-CRAN-perm 
BuildRequires:    R-CRAN-ssanv 
Requires:         R-CRAN-exact2x2 >= 1.6.4
Requires:         R-stats 
Requires:         R-CRAN-exactci 
Requires:         R-CRAN-bpcp 
Requires:         R-CRAN-coin 
Requires:         R-CRAN-perm 
Requires:         R-CRAN-ssanv 

%description
Gives some hypothesis test functions (sign test, median and other quantile
tests, Wilcoxon signed rank test, coefficient of variation test, test of
normal variance, test on weighted sums of Poisson [see Fay and Kim
<doi:10.1002/bimj.201600111>], sample size for t-tests with different
variances and non-equal n per arm, Behrens-Fisher test, nonparametric ABC
intervals, Wilcoxon-Mann-Whitney test [with effect estimates and
confidence intervals, see Fay and Malinovsky <doi:10.1002/sim.7890>],
two-sample melding tests [see Fay, Proschan, and Brittain
<doi:10.1111/biom.12231>], one-way ANOVA allowing var.equal=FALSE [see
Brown and Forsythe, 1974, Biometrics]), prevalence confidence intervals
that adjust for sensitivity and specificity [see Lang and Reiczigel, 2014
<doi:10.1016/j.prevetmed.2013.09.015>] or Bayer, Fay, and Graubard, 2023
<doi:10.48550/arXiv.2205.13494>). The focus is on hypothesis tests that
have compatible confidence intervals, but some functions only have
confidence intervals (e.g., prevSeSp).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}