%global __brp_check_rpaths %{nil}
%global packname  nandb
%global packver   2.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Number and Brightness Image Analysis

License:          BSD_3_clause + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1
Requires:         R-core >= 3.1
BuildRequires:    R-CRAN-filesstrings >= 3.2
BuildRequires:    R-CRAN-ijtiff >= 2.2
BuildRequires:    R-CRAN-withr >= 2.1.0
BuildRequires:    R-CRAN-checkmate >= 1.9.3
BuildRequires:    R-CRAN-magrittr >= 1.5
BuildRequires:    R-CRAN-stringr >= 1.4
BuildRequires:    R-CRAN-autothresholdr >= 1.3.11
BuildRequires:    R-CRAN-glue >= 1.3
BuildRequires:    R-CRAN-Rcpp >= 1.0.1
BuildRequires:    R-CRAN-detrendr >= 0.6.12
BuildRequires:    R-CRAN-rlang >= 0.3.3
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-CRAN-BBmisc 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-viridis 
Requires:         R-CRAN-filesstrings >= 3.2
Requires:         R-CRAN-ijtiff >= 2.2
Requires:         R-CRAN-withr >= 2.1.0
Requires:         R-CRAN-checkmate >= 1.9.3
Requires:         R-CRAN-magrittr >= 1.5
Requires:         R-CRAN-stringr >= 1.4
Requires:         R-CRAN-autothresholdr >= 1.3.11
Requires:         R-CRAN-glue >= 1.3
Requires:         R-CRAN-Rcpp >= 1.0.1
Requires:         R-CRAN-detrendr >= 0.6.12
Requires:         R-CRAN-rlang >= 0.3.3
Requires:         R-CRAN-assertthat 
Requires:         R-CRAN-BBmisc 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-reshape2 
Requires:         R-utils 
Requires:         R-CRAN-viridis 

%description
Calculation of molecular number and brightness from fluorescence
microscopy image series. The software was published in a 2016 paper
<doi:10.1093/bioinformatics/btx434>. The seminal paper for the technique
is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review of the
technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}