%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  causalPAF
%global packver   1.2.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.5
Release:          1%{?dist}%{?buildtag}
Summary:          Causal Effect for Population Attributable Fractions (PAF)

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-dagitty 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-forestplot 
BuildRequires:    R-CRAN-ggdag 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-rlist 
BuildRequires:    R-splines 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-dagitty 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-forestplot 
Requires:         R-CRAN-ggdag 
Requires:         R-CRAN-ggplot2 
Requires:         R-grid 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-rlist 
Requires:         R-splines 
Requires:         R-stats 
Requires:         R-utils 

%description
Calculates population attributable fraction causal effects. The
'causalPAF' package contains a suite of functions for causal analysis
calculations of population attributable fractions (PAF) given a causal
diagram which apply both: Pathway-specific population attributable
fractions (PS-PAFs) O’Connell and Ferguson (2022)
<doi:10.1093/ije/dyac079> and Sequential population attributable fractions
Ferguson, O’Connell, and O’Donnell (2020)
<doi:10.1186/s13690-020-00442-x>.  Results are presentable in both table
and plot format.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}