%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  dbGaPCheckup
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          dbGaP Checkup

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-formatR 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-pander 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-rmarkdown 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-questionr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-labelled 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-naniar 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-formatR 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-pander 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-rmarkdown 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-questionr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-labelled 
Requires:         R-stats 
Requires:         R-utils 
Requires:         R-graphics 
Requires:         R-CRAN-naniar 

%description
Contains functions that check for formatting of the Subject Phenotype data
set and data dictionary as specified by the National Center for
Biotechnology Information (NCBI) Database of Genotypes and Phenotypes
(dbGaP) <https://www.ncbi.nlm.nih.gov/gap/docs/submissionguide/>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}