%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  hmmTMB
%global packver   1.0.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.2
Release:          1%{?dist}%{?buildtag}
Summary:          Fit Hidden Markov Models using Template Model Builder

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildRequires:    R-CRAN-R6 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-TMB 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-optimx 
BuildRequires:    R-CRAN-CircStats 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-tmbstan 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-RcppEigen 
Requires:         R-CRAN-R6 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-TMB 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-Matrix 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-optimx 
Requires:         R-CRAN-CircStats 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-tmbstan 
Requires:         R-methods 

%description
Fitting hidden Markov models using automatic differentiation and Laplace
approximation, allowing for fast inference and flexible covariate effects
(including random effects and smoothing splines) on model parameters. The
package is described by Michelot (2022) <arXiv:2211.14139>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}