%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MedianaDesigner
%global packver   0.13
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.13
Release:          1%{?dist}%{?buildtag}
Summary:          Power and Sample Size Calculations for Clinical Trials

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1.2
Requires:         R-core >= 3.1.2
BuildRequires:    R-CRAN-Rcpp >= 0.12.10
BuildRequires:    R-CRAN-RcppNumerical 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-officer 
BuildRequires:    R-CRAN-flextable 
BuildRequires:    R-CRAN-devEMF 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-shinydashboard 
BuildRequires:    R-CRAN-shinyMatrix 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-rootSolve 
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-lmerTest 
BuildRequires:    R-CRAN-pbkrtest 
BuildRequires:    R-CRAN-RcppEigen 
Requires:         R-CRAN-Rcpp >= 0.12.10
Requires:         R-CRAN-RcppNumerical 
Requires:         R-methods 
Requires:         R-CRAN-officer 
Requires:         R-CRAN-flextable 
Requires:         R-CRAN-devEMF 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-shinydashboard 
Requires:         R-CRAN-shinyMatrix 
Requires:         R-CRAN-foreach 
Requires:         R-parallel 
Requires:         R-CRAN-doParallel 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-rootSolve 
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-lmerTest 
Requires:         R-CRAN-pbkrtest 

%description
Efficient simulation-based power and sample size calculations are
supported for a broad class of late-stage clinical trials. The following
modules are included in the package: Adaptive designs with data-driven
sample size or event count re-estimation, Adaptive designs with
data-driven treatment selection, Adaptive designs with data-driven
population selection, Optimal selection of a futility stopping rule, Event
prediction in event-driven trials, Adaptive trials with response-adaptive
randomization (experimental module), Traditional trials with multiple
objectives (experimental module). Traditional trials with
cluster-randomized designs (experimental module).

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}