%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  gmvjoint
%global packver   0.4.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.4.0
Release:          1%{?dist}%{?buildtag}
Summary:          Joint Models of Survival and Multivariate Longitudinal Data

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildRequires:    R-CRAN-Rcpp >= 1.0.6
BuildRequires:    R-CRAN-glmmTMB 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-mvtnorm 
BuildRequires:    R-CRAN-pracma 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-statmod 
BuildRequires:    R-CRAN-xtable 
BuildRequires:    R-CRAN-RcppArmadillo 
Requires:         R-CRAN-Rcpp >= 1.0.6
Requires:         R-CRAN-glmmTMB 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-MASS 
Requires:         R-methods 
Requires:         R-CRAN-mvtnorm 
Requires:         R-CRAN-pracma 
Requires:         R-stats 
Requires:         R-CRAN-statmod 
Requires:         R-CRAN-xtable 

%description
Fit joint models of survival and multivariate longitudinal data. The
longitudinal data is specified by generalised linear mixed models. The
joint models are fit via maximum likelihood using an approximate
expectation maximisation algorithm. Bernhardt (2015)
<doi:10.1016/j.csda.2014.11.011>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}