%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname FastJM %global packver 1.4.2 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.4.2 Release: 1%{?dist}%{?buildtag} Summary: Semi-Parametric Joint Modeling of Longitudinal and Survival Data License: GPL (>= 3) URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-Rcpp >= 1.0.7 BuildRequires: R-CRAN-statmod BuildRequires: R-CRAN-MASS BuildRequires: R-CRAN-dplyr BuildRequires: R-CRAN-nlme BuildRequires: R-CRAN-caret BuildRequires: R-CRAN-survival BuildRequires: R-CRAN-timeROC BuildRequires: R-CRAN-RcppEigen Requires: R-CRAN-Rcpp >= 1.0.7 Requires: R-CRAN-statmod Requires: R-CRAN-MASS Requires: R-CRAN-dplyr Requires: R-CRAN-nlme Requires: R-CRAN-caret Requires: R-CRAN-survival Requires: R-CRAN-timeROC %description Maximum likelihood estimation for the semi-parametric joint modeling of competing risks and longitudinal data applying customized linear scan algorithms, proposed by Li and colleagues (2022) . The time-to-event data is modelled using a (cause-specific) Cox proportional hazards regression model with time-fixed covariates. The longitudinal outcome is modelled using a linear mixed effects model. The association is captured by shared random effects. The model is estimated using an Expectation Maximization algorithm. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}