%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  SQI
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Soil Quality Index

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-CRAN-olsrr 
BuildRequires:    R-CRAN-FactoMineR 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-dplyr 
Requires:         R-stats 
Requires:         R-CRAN-matrixStats 
Requires:         R-CRAN-olsrr 
Requires:         R-CRAN-FactoMineR 

%description
The overall performance of soil ecosystem services and productivity
greatly relies on soil health, making it a crucial indicator. The
evaluation of soil physical, chemical, and biological parameters is
necessary to determine the overall soil quality index. In our package,
three commonly used methods, including linear scoring, regression-based,
and principal component-based soil quality indexing, are employed to
calculate the soil quality index. This package has been developed using
concept of Bastida et al. (2008) and Doran and Parkin (1994)
<doi:10.1016/j.geoderma.2008.08.007> <doi:10.2136/sssaspecpub35.c1>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}