%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  rnmamod
%global packver   0.4.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.4.0
Release:          1%{?dist}%{?buildtag}
Summary:          Bayesian Network Meta-Analysis with Missing Participants

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-cluster 
BuildRequires:    R-CRAN-dendextend 
BuildRequires:    R-CRAN-fdrtool 
BuildRequires:    R-CRAN-gemtc 
BuildRequires:    R-CRAN-ggfittext 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-CRAN-ggrepel 
BuildRequires:    R-CRAN-heatmaply 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-CRAN-knitr 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-mcmcplots 
BuildRequires:    R-CRAN-R2jags 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-writexl 
Requires:         R-CRAN-cluster 
Requires:         R-CRAN-dendextend 
Requires:         R-CRAN-fdrtool 
Requires:         R-CRAN-gemtc 
Requires:         R-CRAN-ggfittext 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggpubr 
Requires:         R-CRAN-ggrepel 
Requires:         R-CRAN-heatmaply 
Requires:         R-CRAN-igraph 
Requires:         R-CRAN-knitr 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-mcmcplots 
Requires:         R-CRAN-R2jags 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-scales 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-writexl 

%description
A comprehensive suite of functions to perform and visualise pairwise and
network meta-analysis with aggregate binary or continuous missing
participant outcome data. The package covers core Bayesian one-stage
models implemented in a systematic review with multiple interventions,
including fixed-effect and random-effects network meta-analysis,
meta-regression, evaluation of the consistency assumption via the
node-splitting approach and the unrelated mean effects model, and
sensitivity analysis. Missing participant outcome data are addressed in
all models of the package. The robustness to primary analysis results can
also be investigated using a novel intuitive index. Methods to evaluate
the transitivity assumption quantitatively are provided. The package also
offers a rich, user-friendly visualisation toolkit that aids in appraising
and interpreting the results thoroughly and preparing the manuscript for
journal submission. The visualisation tools comprise the network plot,
forest plots, panel of diagnostic plots, heatmaps on the extent of missing
participant outcome data in the network, league heatmaps on estimation and
prediction, rankograms, Bland-Altman plot, leverage plot, deviance
scatterplot, heatmap of robustness, barplot of Kullback-Leibler
divergence, heatmap of comparison dissimilarities and dendrogram of
comparison clustering. The package also allows the user to export the
results to an Excel file at the working directory.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}