%global __brp_check_rpaths %{nil}
%global packname  survivalAnalysis
%global packver   0.3.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.0
Release:          1%{?dist}%{?buildtag}
Summary:          High-Level Interface for Survival Analysis and Associated Plots

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.3.0
Requires:         R-core >= 3.3.0
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 >= 2.2.1
BuildRequires:    R-CRAN-dplyr >= 0.8.0
BuildRequires:    R-CRAN-rlang >= 0.2.0
BuildRequires:    R-CRAN-survminer > 0.4.0
BuildRequires:    R-grDevices 
BuildRequires:    R-graphics 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-forcats 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-scales 
BuildRequires:    R-CRAN-cowplot 
BuildRequires:    R-CRAN-tidytidbits 
Requires:         R-CRAN-ggplot2 >= 2.2.1
Requires:         R-CRAN-dplyr >= 0.8.0
Requires:         R-CRAN-rlang >= 0.2.0
Requires:         R-CRAN-survminer > 0.4.0
Requires:         R-grDevices 
Requires:         R-graphics 
Requires:         R-stats 
Requires:         R-utils 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-forcats 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-scales 
Requires:         R-CRAN-cowplot 
Requires:         R-CRAN-tidytidbits 

%description
A high-level interface to perform survival analysis, including
Kaplan-Meier analysis and log-rank tests and Cox regression. Aims at
providing a clear and elegant syntax, support for use in a pipeline,
structured output and plotting. Builds upon the 'survminer' package for
Kaplan-Meier plots and provides a customizable implementation for forest
plots. Kaplan & Meier (1958) <doi:10.1080/01621459.1958.10501452> Cox
(1972) <JSTOR:2985181> Peto & Peto (1972) <JSTOR:2344317>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}