%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MiMIR
%global packver   1.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.5
Release:          1%{?dist}%{?buildtag}
Summary:          Metabolomics-Based Models for Imputing Risk

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-caret 
BuildRequires:    R-CRAN-DT 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-heatmaply 
BuildRequires:    R-CRAN-matrixStats 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-pROC 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-shiny 
BuildRequires:    R-CRAN-shinycssloaders 
BuildRequires:    R-CRAN-shinyFiles 
BuildRequires:    R-CRAN-shinydashboard 
BuildRequires:    R-CRAN-shinyjs 
BuildRequires:    R-CRAN-shinyWidgets 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-survminer 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-fs 
Requires:         R-CRAN-caret 
Requires:         R-CRAN-DT 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-heatmaply 
Requires:         R-CRAN-matrixStats 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-pROC 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-shiny 
Requires:         R-CRAN-shinycssloaders 
Requires:         R-CRAN-shinyFiles 
Requires:         R-CRAN-shinydashboard 
Requires:         R-CRAN-shinyjs 
Requires:         R-CRAN-shinyWidgets 
Requires:         R-stats 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-survminer 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-fs 

%description
Provides an intuitive framework for ad-hoc statistical analysis of 1H-NMR
metabolomics by Nightingale Health. It allows to easily explore new
metabolomics measurements assayed by Nightingale Health, comparing the
distributions with a large Consortium (BBMRI-nl); project previously
published metabolic scores [<doi:10.1016/j.ebiom.2021.103764>,
<doi:10.1161/CIRCGEN.119.002610>, <doi:10.1038/s41467-019-11311-9>,
<doi:10.7554/eLife.63033>, <doi:10.1161/CIRCULATIONAHA.114.013116>,
<doi:10.1007/s00125-019-05001-w>]; and calibrate the metabolic surrogate
values to a desired dataset.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}