countItemsSampleGUI {RclusTool} | R Documentation |
GUI to manually count the number of cells in colonies
Description
Open a Graphical User Interface allowing to choose the images directory, to count manually the number of cells in colonies and to build specific predictive model.
Usage
countItemsSampleGUI(data.sample, RclusTool.env = initParameters())
Arguments
data.sample |
list containing features, profiles and clustering results. |
RclusTool.env |
environment in which all global parameters, raw data and results are stored. |
Details
countItemsSampleGUI opens a Graphical User Interface allowing to choose the images directory, to count manually the number of cells in colonies and to build specific predictive model
Value
RDS file containing the counts.
Examples
dat <- rbind(matrix(rnorm(100, mean = 0, sd = 0.3), ncol = 2),
matrix(rnorm(100, mean = 2, sd = 0.3), ncol = 2),
matrix(rnorm(100, mean = 4, sd = 0.3), ncol = 2))
tf <- tempfile()
write.table(dat, tf, sep=",", dec=".")
x <- importSample(file.features=tf)
x <- computeUnSupervised(x, K=0, pca=TRUE, echo=TRUE)
countResult <- countItemsSampleGUI(x)
[Package RclusTool version 0.91.6 Index]