%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  IsoplotR
%global packver   6.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          6.2
Release:          1%{?dist}%{?buildtag}
Summary:          Statistical Toolbox for Radiometric Geochronology

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-MASS 
Requires:         R-CRAN-MASS 

%description
Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams.
Calculates concordia and discordia ages. Performs linear regression of
measurements with correlated errors using 'York', 'Titterington', 'Ludwig'
and Omnivariant Generalised Least-Squares ('OGLS') approaches. Generates
Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs).
Produces Multidimensional Scaling (MDS) configurations and Shepard plots
of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as
a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age
spectra. Computes weighted means accounting for overdispersion. Calculates
U-Th-He (single grain and central) ages, logratio plots and ternary
diagrams. Processes fission track data using the external detector method
and LA-ICP-MS, calculates central ages and plots fission track and other
data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb,
Th-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as
230Th-U evolution plots.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}