%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  KMunicate
%global packver   0.2.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.5
Release:          1%{?dist}%{?buildtag}
Summary:          KMunicate-Style Kaplan–Meier Plots

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-cowplot 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-pammtools 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-cowplot 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-pammtools 
Requires:         R-CRAN-tidyr 

%description
Produce Kaplan–Meier plots in the style recommended following the
KMunicate study by Morris et al. (2019) <doi:10.1136/bmjopen-2019-030215>.
The KMunicate style consists of Kaplan-Meier curves with confidence
intervals to quantify uncertainty and an extended risk table (per
treatment arm) depicting the number of study subjects at risk, events, and
censored observations over time. The resulting plots are built using
'ggplot2' and can be further customised to a certain extent, including
themes, fonts, and colour scales.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}