mpl_set_parsim_t {TreeSearch} | R Documentation |
Sets a character's parsimony function type
Description
Set the parsimony function type to one defined in the morphydefs.h header file. Setting the character to type NONE_T will also cause it to be excluded from any further calculations.
Usage
mpl_set_parsim_t(char_id, tname = "typename", morphyobj)
Arguments
char_id |
The number of the character (transformation series) as defined in the input matrix. The first character is numbered 1 (one). |
tname |
The parsimony function type as defined in morphydefs.h |
morphyobj |
An instance of the Morphy object. |
Value
A Morphy error code.
Author(s)
Martin Brazeau
See Also
Other Morphy API functions:
GapHandler()
,
MorphyErrorCheck()
,
MorphyWeights()
,
PhyDat2Morphy()
,
SingleCharMorphy()
,
UnloadMorphy()
,
is.morphyPtr()
,
mpl_apply_tipdata()
,
mpl_attach_rawdata()
,
mpl_attach_symbols()
,
mpl_delete_Morphy()
,
mpl_delete_rawdata()
,
mpl_first_down_recon()
,
mpl_first_up_recon()
,
mpl_get_charac_weight()
,
mpl_get_gaphandl()
,
mpl_get_num_charac()
,
mpl_get_num_internal_nodes()
,
mpl_get_numtaxa()
,
mpl_get_symbols()
,
mpl_init_Morphy()
,
mpl_new_Morphy()
,
mpl_second_down_recon()
,
mpl_second_up_recon()
,
mpl_set_charac_weight()
,
mpl_set_num_internal_nodes()
,
mpl_translate_error()
,
mpl_update_lower_root()
,
mpl_update_tip()
,
summary.morphyPtr()