codesFromCohort | Get concept ids from a provided path to cohort json files |
codesFromConceptSet | Get concept ids from a provided path to json files |
codesInUse | Get codes used in the database |
compareCodelists | Compare two codelists |
getATCCodes | Get descendant codes for ATC levels |
getCandidateCodes | Generate candidate codelist for the OMOP CDM |
getConceptClassId | getConceptClassId |
getDescendants | getDescendants |
getDomains | getDomains |
getDoseForm | getDoseForm |
getDrugIngredientCodes | Get descendant codes for drug ingredients |
getICD10StandardCodes | Get corresponding standard codes for ICD-10 chapters and sub-chapters |
getMappings | Show mappings from non-standard vocabularies to standard |
getRelationshipId | Get relationship ID values from the concept relationship table |
getVocabularies | getVocabularies |
getVocabVersion | getVocabVersion |
mockVocabRef | Generate example vocabulary database |
restrictToCodesInUse | Filter a codelist to keep only the codes used in the database |
sourceCodesInUse | Get source codes used in the database |
summariseAchillesCodeUse | Summarise code use from achilles counts |
summariseCodeUse | Summarise code use in patient-level data |
summariseCohortCodeUse | Summarise code use among a cohort in the cdm reference |
summariseOrphanCodes | Find orphan codes related to a codelist |
tableAchillesCodeUse | Format the result of summariseAchillesCodeUse into a visual table. |
tableCodeUse | Format the result of summariseCodeUse into a visual table. |
tableCohortCodeUse | Format the result of summariseCohortCodeUse into a visual table. |
tableOrphanCodes | Format the result of summariseOrphanCodes into a visual table. |