%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  ActiSleep
%global packver   0.2.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.2.2
Release:          1%{?dist}%{?buildtag}
Summary:          Sleep Duration Estimate Algorithm

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5
Requires:         R-core >= 3.5
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-lubridate 
BuildRequires:    R-CRAN-accelerometry 
BuildRequires:    R-CRAN-DBI 
BuildRequires:    R-CRAN-RSQLite 
BuildRequires:    R-CRAN-lazyeval 
BuildRequires:    R-methods 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-tibble 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-lubridate 
Requires:         R-CRAN-accelerometry 
Requires:         R-CRAN-DBI 
Requires:         R-CRAN-RSQLite 
Requires:         R-CRAN-lazyeval 
Requires:         R-methods 
Requires:         R-utils 
Requires:         R-CRAN-tibble 

%description
Provides sleep duration estimates using a Pruned Dynamic Programming (PDP)
algorithm that efficiently identifies change-points. PDP applied to
physical activity data can identify transitions from wakefulness to sleep
and vice versa. Baek, Jonggyu, Banker, Margaret, Jansen, Erica C., She,
Xichen, Peterson, Karen E., Pitchford, E. Andrew, Song, Peter X. K. (2021)
An Efficient Segmentation Algorithm to Estimate Sleep Duration from
Actigraphy Data <doi:10.1007/s12561-021-09309-3>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}