plot.extr {ProbBreed} | R Documentation |
Plots for the extr
object
Description
Build plots using the outputs stored in the extr
object.
Usage
## S3 method for class 'extr'
plot(x, ..., category = "ppdensity")
Arguments
x |
An object of class |
... |
Passed to ggplot2::geom_histogram, when |
category |
A string indicating which plot to build. See options in the Details section. |
Details
The available options are:
-
ppdensity
: Density plots of the empirical and sampled data, useful to assess the model's convergence. -
density
: Density plots of the model's effects. -
histogram
: Histograms of the model's effects. -
traceplot
: Trace plot showing the changes in the effects' values across iterations and chains.
See Also
Examples
mod = bayes_met(data = soy,
gen = "Gen",
loc = "Loc",
repl = NULL,
year = NULL,
reg = NULL,
res.het = FALSE,
trait = 'Y',
iter = 6000, cores = 4, chains = 4)
outs = extr_outs(model = mod,
probs = c(0.05, 0.95),
verbose = TRUE)
plot(results, category = "ppdensity")
plot(results, category = "density")
plot(results, category = "histogram")
plot(results, category = "traceplot")
[Package ProbBreed version 1.0.4.0 Index]