%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  BEAMR
%global packver   1.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          Bootstrap Evaluation of Association Matrices

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggmosaic 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-ggpubr 
BuildRequires:    R-CRAN-logistf 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rlist 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-survminer 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggmosaic 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-ggpubr 
Requires:         R-CRAN-logistf 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-MASS 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rlist 
Requires:         R-stats 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-survminer 

%description
A bootstrap-based approach to integrate multiple forms of high dimensional
genomic data with multiple clinical endpoints.  This method is used to
find clinically meaningful groups of genomic features, such as genes or
pathways. A manuscript describing this method is in preparation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}