MPSEM-package | Modelling Phylogenetic Signals using Eigenvector Maps |
add.edge | MPSEM graph Manipulation Functions |
add.vertex | MPSEM graph Manipulation Functions |
as.data.frame.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
collapse.vertex | MPSEM graph Manipulation Functions |
EvolveOptimMarkovTree | Simulate the Evolution of a Quantitative Trait |
getAncGraphLocations | Phylogenetic Eigenvector Maps |
getGraphLocations | Phylogenetic Eigenvector Maps |
graph | Class and Method for Directed Graphs |
graph-class | Class and Method for Directed Graphs |
graph-functions | MPSEM graph Manipulation Functions |
lm-utils | Linear Modelling Utility Functions |
lmforwardsequentialAICc | Linear Modelling Utility Functions |
lmforwardsequentialsidak | Linear Modelling Utility Functions |
Locations2PEMscores | Phylogenetic Eigenvector Maps |
OUvar | Simulate the Evolution of a Quantitative Trait |
PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
PEM-class | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
PEM-functions | Phylogenetic Eigenvector Maps |
PEM.build | Phylogenetic Eigenvector Maps |
PEM.fitSimple | Phylogenetic Eigenvector Maps |
PEM.forcedSimple | Phylogenetic Eigenvector Maps |
PEM.updater | Phylogenetic Eigenvector Maps |
PEMInfluence | Phylogenetic Eigenvector Maps |
PEMvar | Simulate the Evolution of a Quantitative Trait |
PEMweights | Phylogenetic Eigenvector Maps |
Phylo2DirectedGraph | MPSEM graph Manipulation Functions |
pop.graph | MPSEM graph Manipulation Functions |
predict.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
print.graph | Class and Method for Directed Graphs |
print.PEM | Class and Methods for Phylogenetic Eigenvector Maps (PEM) |
rm.edge | MPSEM graph Manipulation Functions |
rm.vertex | MPSEM graph Manipulation Functions |
simulation | Simulate the Evolution of a Quantitative Trait |
trait | Simulate the Evolution of a Quantitative Trait |
trait-simulator | Simulate the Evolution of a Quantitative Trait |
TraitOUsimTree | Simulate the Evolution of a Quantitative Trait |
TraitVarGraphSim | Simulate the Evolution of a Quantitative Trait |
utils | Linear Modelling Utility Functions |