Modelling Phylogenetic Signals using Eigenvector Maps


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Documentation for package ‘MPSEM’ version 0.4-4

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MPSEM-package Modelling Phylogenetic Signals using Eigenvector Maps
add.edge MPSEM graph Manipulation Functions
add.vertex MPSEM graph Manipulation Functions
as.data.frame.PEM Class and Methods for Phylogenetic Eigenvector Maps (PEM)
collapse.vertex MPSEM graph Manipulation Functions
EvolveOptimMarkovTree Simulate the Evolution of a Quantitative Trait
getAncGraphLocations Phylogenetic Eigenvector Maps
getGraphLocations Phylogenetic Eigenvector Maps
graph Class and Method for Directed Graphs
graph-class Class and Method for Directed Graphs
graph-functions MPSEM graph Manipulation Functions
lm-utils Linear Modelling Utility Functions
lmforwardsequentialAICc Linear Modelling Utility Functions
lmforwardsequentialsidak Linear Modelling Utility Functions
Locations2PEMscores Phylogenetic Eigenvector Maps
OUvar Simulate the Evolution of a Quantitative Trait
PEM Class and Methods for Phylogenetic Eigenvector Maps (PEM)
PEM-class Class and Methods for Phylogenetic Eigenvector Maps (PEM)
PEM-functions Phylogenetic Eigenvector Maps
PEM.build Phylogenetic Eigenvector Maps
PEM.fitSimple Phylogenetic Eigenvector Maps
PEM.forcedSimple Phylogenetic Eigenvector Maps
PEM.updater Phylogenetic Eigenvector Maps
PEMInfluence Phylogenetic Eigenvector Maps
PEMvar Simulate the Evolution of a Quantitative Trait
PEMweights Phylogenetic Eigenvector Maps
Phylo2DirectedGraph MPSEM graph Manipulation Functions
pop.graph MPSEM graph Manipulation Functions
predict.PEM Class and Methods for Phylogenetic Eigenvector Maps (PEM)
print.graph Class and Method for Directed Graphs
print.PEM Class and Methods for Phylogenetic Eigenvector Maps (PEM)
rm.edge MPSEM graph Manipulation Functions
rm.vertex MPSEM graph Manipulation Functions
simulation Simulate the Evolution of a Quantitative Trait
trait Simulate the Evolution of a Quantitative Trait
trait-simulator Simulate the Evolution of a Quantitative Trait
TraitOUsimTree Simulate the Evolution of a Quantitative Trait
TraitVarGraphSim Simulate the Evolution of a Quantitative Trait
utils Linear Modelling Utility Functions