%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  DrugUtilisation
%global packver   0.7.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.7.1
Release:          1%{?dist}%{?buildtag}
Summary:          Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model

License:          Apache License (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-CodelistGenerator >= 3.1.0
BuildRequires:    R-CRAN-CDMConnector >= 1.4.0
BuildRequires:    R-CRAN-PatientProfiles >= 1.0.0
BuildRequires:    R-CRAN-omopgenerics >= 0.2.3
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-dbplyr 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-clock 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-visOmopResults 
BuildRequires:    R-CRAN-lifecycle 
BuildRequires:    R-CRAN-stringr 
Requires:         R-CRAN-CodelistGenerator >= 3.1.0
Requires:         R-CRAN-CDMConnector >= 1.4.0
Requires:         R-CRAN-PatientProfiles >= 1.0.0
Requires:         R-CRAN-omopgenerics >= 0.2.3
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-dbplyr 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-clock 
Requires:         R-CRAN-tidyr 
Requires:         R-CRAN-rlang 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-visOmopResults 
Requires:         R-CRAN-lifecycle 
Requires:         R-CRAN-stringr 

%description
Summarise patient-level drug utilisation cohorts using data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model. New
users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}